13 items, newest first.
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Ho N, Ellington CN, Hou J, Addagudi S, Mo S, Tao T, Li D, Zhuang Y, Wang H, Cheng X, Song L, Xing EP. · bioRxiv · 2024-12-03
AIDO.Cell (GenBio AI): dense transcriptome-scale context single-cell models.
Bunne C et al. · Cell · 2024-12-01
Landmark perspective defining the AI Virtual Cell (AIVC): multiscale, multimodal, universal representations and virtual instruments.
Vieira Junior MG, de Almeida Côrtes AM, Gonçalves Carneiro FR, Carels N, Silva FABD. · Scientific reports · 2024-10-29
In silico exploration of GBM attractors from scRNA-seq (Boolean network).
Yang X et al. · Cell research · 2024-10-08
GeneCompass: knowledge-informed cross-species foundation model (CAS).
Liu SJ et al. · Genome biology · 2024-10-07
In vivo Perturb-seq of GBM and microenvironment dissects drivers and radiotherapy responses.
Wenteler A, Occhetta M, Branson N, Curean V, Huebner M, Dee W, Connell W, Chung SP, Hawkins-Hooker A, Ektefaie Y, Valdez Córdova CM, Gallagher-Syed A. · bioRxiv · 2024-10-03
PertEval-scFM: benchmarking scFMs for perturbation effect prediction.
Hao M, Gong J, Zeng X, Liu C, Guo Y, Cheng X, Wang T, Ma J, Zhang X, Song L. · Nature methods · 2024-06-06
scFoundation: 100M-parameter model on ~50M human cells (Tsinghua/BioMap).
Haley MJ et al. · Science advances · 2024-05-17
Hypoxia coordinates spatial landscape of myeloid cells in GBM.
Greenwald AC et al. · Cell · 2024-04-22
Greenwald et al.: multi-layered spatial organization of GBM.
Chen RJ et al. · Nature medicine · 2024-03-19
UNI: general-purpose computational pathology foundation model (incl. brain tumor tasks).
Cui H, Wang C, Maan H, Pang K, Luo F, Duan N, Wang B. · Nature methods · 2024-02-26
scGPT: generative pretrained transformer on 33M cells (Bo Wang lab).
Saucedo-Mora L, Sanz MÁ, Montáns FJ, Benítez JM. · Computer methods and programs in biomedicine · 2024-01-26
Agent-based hybrid model of GBM cell biophysics and treatment.
Piran Z, Cohen N, Hoshen Y, Nitzan M. · Nature biotechnology · 2024-01-15
biolord: disentangled representations for counterfactual cell prediction.