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Sanaki Y, Shigenobu S, Niwa R. · bioRxiv · 2026-09-24
ISP3 platform: Geneformer-based sequential multi-gene in silico perturbation.
Zhang Y, Venkatesh MS, Theodoris CV. · Nature protocols · 2026-04-23
Nature Protocols: discovering therapeutic targets with Geneformer in silico perturbation.
Vieira Junior MG, de Almeida Côrtes AM, Gonçalves Carneiro FR, Carels N, Silva FABD. · Scientific reports · 2024-10-29
In silico exploration of GBM attractors from scRNA-seq (Boolean network).
Theodoris CV, Xiao L, Chopra A, Chaffin MD, Al Sayed ZR, Hill MC, Mantineo H, Brydon EM, Zeng Z, Liu XS, Ellinor PT. · Nature · 2023-05-31
Geneformer: context-aware transformer enabling in silico deletion/network predictions.