5 items, newest first.
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Li W, Sun X, Pei S. · BMC medicine · 2026-08-12
Critique of the DMG generative growth study (domain shift, nesting).
Kendiukhov I. · BMC genomics · 2026-07-22
Attention-derived edge scores in scFMs add no GRN information beyond baselines.
Ahlmann-Eltze C, Huber W, Anders S. · Nature methods · 2025-08-04
Ahlmann-Eltze, Huber, Anders: deep models don't beat simple linear baselines for perturbation prediction.
Csendes G, Sanz G, Szalay KZ, Szalai B. · BMC genomics · 2025-04-23
Csendes et al.: foundation cell models vs simple baselines for post-perturbation prediction.
Kedzierska KZ, Crawford L, Amini AP, Lu AX. · Genome biology · 2025-04-18
Kedzierska et al.: zero-shot limitations of scGPT/Geneformer.