preprint✓ VerifiedVC0021
Pearce JD, Simmonds SE, Mahmoudabadi G, Krishnan L, Palla G, Istrate A, Tarashansky A, Nelson B, Valenzuela O, Li D, Quake SR, Karaletsos T. · bioRxiv · 2025-04-29
TranscriptFormer (CZI): generative cross-species cell atlas, 112M cells, 12 species.
DOI
model✓ VerifiedVC0101
Chan Zuckerberg Initiative · CZI blog · 2025-08-20
rBio: Qwen2.5-3B reasoning LLM post-trained with TranscriptFormer as soft verifier.
Source
paper✓ VerifiedVC0029
Yang X et al. · Cell research · 2024-10-08
GeneCompass: knowledge-informed cross-species foundation model (CAS).
DOIPubMed
preprint✓ VerifiedVC0012
Rosen Y, Roohani Y, Agrawal A, Samotorcan L, Tabula Sapiens Consortium, Quake SR, Quake SR, Leskovec J. · bioRxiv · 2023-11-29
Universal Cell Embeddings (UCE), cross-species zero-shot cell embedding (Leskovec/Quake).
DOI
org✓ VerifiedVC0100
Chan Zuckerberg Initiative · web · date n/a
CZI hub hosting virtual cell models (TranscriptFormer, rBio, etc.).
Source