paper✓ VerifiedVC0024
Tejada-Lapuerta A, Schaar AC, Gutgesell R, Palla G, Halle L, Minaeva M, Vornholz L, Dony L, Drummer F, Richter T, Bahrami M, Theis FJ. · Nature methods · 2025-10-30
Nicheformer (Theis lab): single-cell + spatial foundation model, Nat Methods 2025.
DOIPubMed
paperPartly relevant✓ VerifiedVC0026
Chen W et al. · Nature methods · 2025-05-29
OmiCLIP/Loki: visual-omics foundation model bridging H&E and spatial transcriptomics.
DOIPubMed
preprint✓ VerifiedVC0023
Wen H, Tang W, Dai X, Ding J, Jin W, Xie Y, Tang J. · bioRxiv · 2023-10-05
CellPLM: cell language model beyond single cells (spatial context).
DOI
preprint✓ VerifiedVC0136
Li et al. · bioRxiv · 2026-03-16
AetherCell unifies clinical RNA-seq and perturbation assays for generative response prediction and in vivo repurposing.
DOI
paperBrain tumor✓ VerifiedVC0098
Li J, Liu R, Xing Y, Gao X, Yin Q, Su Q. · JCO precision oncology · 2026-02-20
MRI foundation model for brain tumor molecular profiling and progression.
DOIPubMed
preprint✓ VerifiedVC0034
Kalfon J, Peyré G, Cantini L. · bioRxiv · 2025-12-15
scPRINT-2: next-gen cell foundation models and benchmarks.
DOI